Evaluation of genome similarities using independent components

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MetadadosDescriçãoIdioma
Autor(es): dc.creatorSáfadi, Thelma-
Autor(es): dc.creatorFerreira, Leila Maria-
Data de aceite: dc.date.accessioned2026-02-09T12:54:07Z-
Data de disponibilização: dc.date.available2026-02-09T12:54:07Z-
Data de envio: dc.date.issued2021-07-06-
Data de envio: dc.date.issued2021-07-06-
Data de envio: dc.date.issued2019-
Fonte completa do material: dc.identifierhttps://repositorio.ufla.br/handle/1/46660-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/capes/1170541-
Descrição: dc.descriptionWe propose the use of independent component analysis to find similarities of genomes. Considering different numbers of independent components, the complete linkage method was used to identify groups based on the estimated coefficients of the mixing matrix. The sequences analyzed correspond to the strains of the Mycobacterium tuberculosis genome, ten sequences were analyzed, obtained from the National Center for Biotechnology Information (NCBI, 2017). The GC-content of each sequence was evaluated using a sliding window of 10,000 bases. The clustering analysis using the independent components of the analyzed sequences was essential to verify the dissimilarity of the sequences.-
Formato: dc.formatapplication/pdf-
Idioma: dc.languageen-
Publicador: dc.publisherUniversidade Federal de Lavras-
Direitos: dc.rightsAttribution 4.0 International-
Direitos: dc.rightsAttribution 4.0 International-
Direitos: dc.rightsacesso aberto-
Direitos: dc.rightshttp://creativecommons.org/licenses/by/4.0/-
Direitos: dc.rightshttp://creativecommons.org/licenses/by/4.0/-
???dc.source???: dc.sourceRevista Brasileira de Biometria-
Palavras-chave: dc.subjectGC-content-
Palavras-chave: dc.subjectMycobacterium tuberculosis genomes-
Palavras-chave: dc.subjectCluster analysis-
Palavras-chave: dc.subjectGenomas de Mycobacterium tuberculosis-
Palavras-chave: dc.subjectAnálise de cluster-
Título: dc.titleEvaluation of genome similarities using independent components-
Tipo de arquivo: dc.typeArtigo-
Aparece nas coleções:Repositório Institucional da Universidade Federal de Lavras (RIUFLA)

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