Evolution and spread of Xanthomonas citri subsp. citri in the São Paulo, Brazil, citrus belt inferred from 758 novel genomes

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MetadadosDescriçãoIdioma
Autor(es): dc.contributorUniversidade Estadual Paulista (UNESP)-
Autor(es): dc.contributorUniversidade de São Paulo (USP)-
Autor(es): dc.contributorManchester Metropolitan University-
Autor(es): dc.contributorFundo de Defesa da Citricultura-Fundecitrus-
Autor(es): dc.creatorZamunér, Caio Felipe Cavicchia-
Autor(es): dc.creatorCarhuaricra-Huaman, Dennis-
Autor(es): dc.creatorRagupathy, Roobinidevi-
Autor(es): dc.creatorRedfern, James-
Autor(es): dc.creatorRodriguez-Cueva, Carmen L.-
Autor(es): dc.creatorBehlau, Franklin-
Autor(es): dc.creatorEnright, Mark C.-
Autor(es): dc.creatorFerreira, Henrique-
Autor(es): dc.creatorSetubal, João C.-
Data de aceite: dc.date.accessioned2025-08-21T21:01:47Z-
Data de disponibilização: dc.date.available2025-08-21T21:01:47Z-
Data de envio: dc.date.issued2025-04-29-
Data de envio: dc.date.issued2024-12-31-
Fonte completa do material: dc.identifierhttp://dx.doi.org/10.1099/mgen.0.001338-
Fonte completa do material: dc.identifierhttps://hdl.handle.net/11449/306951-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/11449/306951-
Descrição: dc.descriptionThe São Paulo state citrus belt in Brazil is a major citrus production region. Since at least 1957, citrus plantations in this region have been affected by citrus canker, an economically damaging disease caused by Xanthomonas citri subsp. citri (Xcc). For about 50 years, until 2017, a citrus canker eradication programme was carried out in this region. In this work, our aim was to investigate the effects of the eradication programme on genetic variability and evolution of Xcc. To this end, we sequenced and analysed 758 Xcc genomes sampled in the São Paulo citrus belt, together with 730 publicly available Xcc genomes from around the world. Our phylogenomic analyses show that these genomes can be grouped into seven major lineages and that in São Paulo, lineage L7 is dominant. Our time estimate for its appearance closely matches the date when citrus production expanded. L7 can be subdivided into lineages L7.1 and L7.2. In our samples, L7.2, which we estimate to have emerged around 1964, is by far the most abundant, showing that the eradication programme had little impact on strain diversification. On the other hand, oscillations in the estimated effective population size of L7.2 strains over time closely match the shifts in the eradication pro-gramme. In sum, we present a detailed view of the genomic diversity of Xcc in the world and in São Paulo, the largest such effort in terms of a number of genomes for a crop pathogen undertaken so far. The methods employed here can form the basis for active genomic surveillance of Xcc in major citrus production areas.-
Descrição: dc.descriptionFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)-
Descrição: dc.descriptionConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)-
Descrição: dc.descriptionBiotechnology and Biological Sciences Research Council-
Descrição: dc.descriptionDepartamento de Biologia Instituto de Biociências Universidade Estadual Paulista, Av. 24A, 1515, Bela Vista, São Paulo-
Descrição: dc.descriptionDepartamento de Bioquímica Instituto de Química Universidade de São Paulo, SP-
Descrição: dc.descriptionDepartment of Life Sciences Manchester Metropolitan University, Chester Street-
Descrição: dc.descriptionDepartment of Natural Sciences Manchester Metropolitan University, Chester Street-
Descrição: dc.descriptionFundo de Defesa da Citricultura-Fundecitrus, Av. Dr. Adhemar Pereira de Barros, 201, São Paulo-
Descrição: dc.descriptionDepartamento de Biologia Instituto de Biociências Universidade Estadual Paulista, Av. 24A, 1515, Bela Vista, São Paulo-
Descrição: dc.descriptionFAPESP: 2017/50454-9-
Descrição: dc.descriptionFAPESP: 2018/21164-5-
Descrição: dc.descriptionCNPq: 302872/2020-5-
Descrição: dc.descriptionCNPq: 305961/2019-5-
Descrição: dc.descriptionCNPq: 307163/2020-2-
Descrição: dc.descriptionCNPq: 465440/2014-2-
Descrição: dc.descriptionBiotechnology and Biological Sciences Research Council: BB/R022720/1-
Descrição: dc.descriptionBiotechnology and Biological Sciences Research Council: BB/S018891/1-
Idioma: dc.languageen-
Relação: dc.relationMicrobial Genomics-
???dc.source???: dc.sourceScopus-
Palavras-chave: dc.subjectcitrus canker-
Palavras-chave: dc.subjectevolution-
Palavras-chave: dc.subjectgenomes-
Palavras-chave: dc.subjectSão Paulo state citrus belt-
Palavras-chave: dc.subjectXanthomonas citri-
Título: dc.titleEvolution and spread of Xanthomonas citri subsp. citri in the São Paulo, Brazil, citrus belt inferred from 758 novel genomes-
Tipo de arquivo: dc.typelivro digital-
Aparece nas coleções:Repositório Institucional - Unesp

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