Decoding the chromosome-scale genome of the nutrient-rich Agaricus subrufescens: a resource for fungal biology and biotechnology

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Autor(es): dc.contributorUniversidade Federal de Lavras (UFLA)-
Autor(es): dc.contributorUniversity of Florida-
Autor(es): dc.contributorUniversidade de São Paulo (USP)-
Autor(es): dc.contributorUniversidade Estadual Paulista (UNESP)-
Autor(es): dc.contributorEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)-
Autor(es): dc.creatorde Abreu, Carlos Godinho-
Autor(es): dc.creatorRoesch, Luiz Fernando Wurdig-
Autor(es): dc.creatorAndreote, Fernando Dini-
Autor(es): dc.creatorSilva, Saura Rodrigues-
Autor(es): dc.creatorde Moraes, Tatiana Silveira Junqueira-
Autor(es): dc.creatorZied, Diego Cunha-
Autor(es): dc.creatorde Siqueira, Félix Gonçalves-
Autor(es): dc.creatorDias, Eustáquio Souza-
Autor(es): dc.creatorVarani, Alessandro M.-
Autor(es): dc.creatorPylro, Victor Satler-
Data de aceite: dc.date.accessioned2025-08-21T18:25:37Z-
Data de disponibilização: dc.date.available2025-08-21T18:25:37Z-
Data de envio: dc.date.issued2025-04-29-
Data de envio: dc.date.issued2023-10-31-
Fonte completa do material: dc.identifierhttp://dx.doi.org/10.1016/j.resmic.2023.104116-
Fonte completa do material: dc.identifierhttps://hdl.handle.net/11449/304002-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/11449/304002-
Descrição: dc.descriptionAgaricus subrufescens, also known as the “sun mushroom,” has significant nutritional and medicinal value. However, its short shelf life due to the browning process results in post-harvest losses unless it's quickly dehydrated. This restricts its availability to consumers in the form of capsules. A genome sequence of A. subrufescens may lead to new cultivation alternatives or the application of gene editing strategies to delay the browning process. We assembled a chromosome-scale genome using a hybrid approach combining Illumina and Nanopore sequencing. The genome was assembled into 13 chromosomes and 31 unplaced scaffolds, totaling 44.5 Mb with 96.5% completeness and 47.24% GC content. 14,332 protein-coding genes were identified, with 64.6% of the genome covered by genes and 23.41% transposable elements. The mitogenome was circularized and encoded fourteen typical mitochondrial genes. Four polyphenol oxidase (PPO) genes and the Mating-type locus were identified. Phylogenomic analysis supports the placement of A. subrufescens in the Agaricomycetes clade. This is the first available genome sequence of a strain of the “sun mushroom.” Results are available through a Genome Browser (https://plantgenomics.ncc.unesp.br/gen.php?id=Asub) and can support further fungal biological and genomic studies.-
Descrição: dc.descriptionBrazilian Microbiome Project-
Descrição: dc.descriptionCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)-
Descrição: dc.descriptionDepartment of Biology Federal University of Lavras - UFLA, Minas Gerais-
Descrição: dc.descriptionDepartment of Microbiology and Cell Science University of Florida-
Descrição: dc.descriptionDepartment of Soil Science “Luiz de Queiroz” College of Agriculture University of São Paulo, SP-
Descrição: dc.descriptionDepartment of Crop Production School of Agricultural and Technological Sciences São Paulo State University (UNESP)-
Descrição: dc.descriptionLaboratory of Biochemical Processes EMBRAPA Agroenergia, DF-
Descrição: dc.descriptionUNESP - São Paulo State University School of Agricultural and Veterinarian Sciences Department of Agricultural and Environmental Biotechnology, Campus Jaboticabal, SP-
Descrição: dc.descriptionDepartment of Crop Production School of Agricultural and Technological Sciences São Paulo State University (UNESP)-
Descrição: dc.descriptionUNESP - São Paulo State University School of Agricultural and Veterinarian Sciences Department of Agricultural and Environmental Biotechnology, Campus Jaboticabal, SP-
Idioma: dc.languageen-
Relação: dc.relationResearch in Microbiology-
???dc.source???: dc.sourceScopus-
Palavras-chave: dc.subjectAgaricus subrufescens-
Palavras-chave: dc.subjectBasidiomycetes-
Palavras-chave: dc.subjectChromosome-scale genome assembly-
Palavras-chave: dc.subjectHybrid DNA sequencing-
Título: dc.titleDecoding the chromosome-scale genome of the nutrient-rich Agaricus subrufescens: a resource for fungal biology and biotechnology-
Tipo de arquivo: dc.typelivro digital-
Aparece nas coleções:Repositório Institucional - Unesp

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