Dynamic clade transitions and the influence of vaccination on the spatiotemporal circulation of SARS-CoV-2 variants

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Autor(es): dc.contributorFaculdade de Medicina de São José do Rio Preto; São José do Rio Preto-
Autor(es): dc.contributorButantan Institute-
Autor(es): dc.contributorUniversidade de São Paulo (USP)-
Autor(es): dc.contributorUniversidade Estadual Paulista (UNESP)-
Autor(es): dc.contributorFIOCRUZ-
Autor(es): dc.contributorClimate Amplified Diseases And Epidemics (CLIMADE)-
Autor(es): dc.contributorUniversita Campus Bio-Medico di Roma-
Autor(es): dc.contributorKansas StateUniversity-
Autor(es): dc.contributorUniversidade Feevale-
Autor(es): dc.contributorNew Mexico State University-
Autor(es): dc.contributorUniversity of Washington-
Autor(es): dc.contributorUniversity of Texas Medical Branch-
Autor(es): dc.creatorBanho, Cecília Artico-
Autor(es): dc.creatorde Carvalho Marques, Beatriz-
Autor(es): dc.creatorSacchetto, Lívia-
Autor(es): dc.creatorLima, Ana Karoline Sepedro-
Autor(es): dc.creatorParra, Maisa Carla Pereira-
Autor(es): dc.creatorLima, Alex Ranieri Jeronimo-
Autor(es): dc.creatorRibeiro, Gabriela-
Autor(es): dc.creatorMartins, Antonio Jorge-
Autor(es): dc.creatorBarros, Claudia Renata dos Santos-
Autor(es): dc.creatorElias, Maria Carolina-
Autor(es): dc.creatorSampaio, Sandra Coccuzzo-
Autor(es): dc.creatorSlavov, Svetoslav Nanev-
Autor(es): dc.creatorRodrigues, Evandra Strazza-
Autor(es): dc.creatorSantos, Elaine Vieira-
Autor(es): dc.creatorCovas, Dimas Tadeu-
Autor(es): dc.creatorKashima, Simone-
Autor(es): dc.creatorBrassaloti, Ricardo Augusto-
Autor(es): dc.creatorPetry, Bruna-
Autor(es): dc.creatorClemente, Luan Gaspar-
Autor(es): dc.creatorCoutinho, Luiz Lehmann-
Autor(es): dc.creatorAssato, Patricia Akemi-
Autor(es): dc.creatorda Silva da Costa, Felipe Allan-
Autor(es): dc.creatorGrotto, Rejane Maria Tommasini-
Autor(es): dc.creatorPoleti, Mirele Daiana-
Autor(es): dc.creatorLesbon, Jessika Cristina Chagas-
Autor(es): dc.creatorMattos, Elisangela Chicaroni-
Autor(es): dc.creatorFukumasu, Heidge-
Autor(es): dc.creatorGiovanetti, Marta-
Autor(es): dc.creatorAlcantara, Luiz Carlos Junior-
Autor(es): dc.creatorSouza-Neto, Jayme A.-
Autor(es): dc.creatorRahal, Paula-
Autor(es): dc.creatorAraújo, João Pessoa-
Autor(es): dc.creatorSpilki, Fernando Rosado-
Autor(es): dc.creatorAlthouse, Benjamin M.-
Autor(es): dc.creatorVasilakis, Nikos-
Autor(es): dc.creatorNogueira, Maurício Lacerda-
Data de aceite: dc.date.accessioned2025-08-21T22:23:14Z-
Data de disponibilização: dc.date.available2025-08-21T22:23:14Z-
Data de envio: dc.date.issued2025-04-29-
Data de envio: dc.date.issued2024-11-30-
Fonte completa do material: dc.identifierhttp://dx.doi.org/10.1038/s41541-024-00933-w-
Fonte completa do material: dc.identifierhttps://hdl.handle.net/11449/297883-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/11449/297883-
Descrição: dc.descriptionSince 2021, the emergence of variants of concern (VOC) has led Brazil to experience record numbers of in COVID-19 cases and deaths. The expanded spread of the SARS-CoV-2 combined with a low vaccination rate has contributed to the emergence of new mutations that may enhance viral fitness, leading to the persistence of the disease. Due to limitations in the real-time genomic monitoring of new variants in some Brazilian states, we aimed to investigate whether genomic surveillance, coupled with epidemiological data and SARS-CoV-2 variants spatiotemporal spread in a smaller region, can reflect the pandemic progression at a national level. Our findings revealed three SARS-CoV-2 variant replacements from 2021 to early 2022, corresponding to the introduction and increase in the frequency of Gamma, Delta, and Omicron variants, as indicated by peaks of the Effective Reproductive Number (Reff). These distinct clade replacements triggered two waves of COVID-19 cases, influenced by the increasing vaccine uptake over time. Our results indicated that the effectiveness of vaccination in preventing new cases during the Delta and Omicron circulations was six and eleven times higher, respectively, than during the period when Gamma was predominant, and it was highly efficient in reducing the number of deaths. Furthermore, we demonstrated that genomic monitoring at a local level can reflect the national trends in the spread and evolution of SARS-CoV-2.-
Descrição: dc.descriptionLaboratório de Pesquisas em Virologia Faculdade de Medicina de São José do Rio Preto; São José do Rio Preto-
Descrição: dc.descriptionCenter for Viral Surveillance and Serological Assessment (CeVIVAS) Butantan Institute-
Descrição: dc.descriptionUniversity of São Paulo Ribeirão Preto Medical School Blood Center of Ribeirão Preto, SP-
Descrição: dc.descriptionUniversity of São Paulo Centro de Genômica Funcional da ESALQ, SP-
Descrição: dc.descriptionSão Paulo State University (UNESP) School of Agricultural Sciences Department of Bioprocesses and Biotechnology-
Descrição: dc.descriptionSão Paulo State University (UNESP) School of Agricultural Sciences-
Descrição: dc.descriptionMolecular Biology Laboratory Applied Biotechnology Laboratory Clinical Hospital of the Botucatu Medical School-
Descrição: dc.descriptionDepartment of Veterinary Medicine School of Animal Science and Food Engineering University of São Paulo, São Paulo-
Descrição: dc.descriptionOswaldo Cruz Foundation FIOCRUZ-
Descrição: dc.descriptionClimate Amplified Diseases And Epidemics (CLIMADE)-
Descrição: dc.descriptionSciences and Technologies for Sustainable Development and One Health Universita Campus Bio-Medico di Roma-
Descrição: dc.descriptionDepartment of Diagnostic Medicine/Pathobiology College of Veterinary Medicine Kansas StateUniversity-
Descrição: dc.descriptionLaboratório de Estudos Genômicos Departamento de Biologia Instituto de Biociências Letras e Ciências Exatas (IBILCE) Universidade Estadual Paulista (Unesp)-
Descrição: dc.descriptionInstituto de Biotecnologia Universidade Estadual Paulista (Unesp)-
Descrição: dc.descriptionLaboratório de Microbiologia Molecular Instituto de Ciências da Saúde Universidade Feevale-
Descrição: dc.descriptionDepartment of Biology New Mexico State University-
Descrição: dc.descriptionInformation School University of Washington-
Descrição: dc.descriptionDepartment of Pathology University of Texas Medical Branch-
Descrição: dc.descriptionCenter for Vector-Borne and Zoonotic Diseases University of Texas Medical Branch-
Descrição: dc.descriptionInstitute for Human Infection and Immunity University of Texas Medical Branch-
Descrição: dc.descriptionSão Paulo State University (UNESP) School of Agricultural Sciences Department of Bioprocesses and Biotechnology-
Descrição: dc.descriptionSão Paulo State University (UNESP) School of Agricultural Sciences-
Descrição: dc.descriptionMolecular Biology Laboratory Applied Biotechnology Laboratory Clinical Hospital of the Botucatu Medical School-
Descrição: dc.descriptionLaboratório de Estudos Genômicos Departamento de Biologia Instituto de Biociências Letras e Ciências Exatas (IBILCE) Universidade Estadual Paulista (Unesp)-
Descrição: dc.descriptionInstituto de Biotecnologia Universidade Estadual Paulista (Unesp)-
Idioma: dc.languageen-
Relação: dc.relationnpj Vaccines-
???dc.source???: dc.sourceScopus-
Título: dc.titleDynamic clade transitions and the influence of vaccination on the spatiotemporal circulation of SARS-CoV-2 variants-
Tipo de arquivo: dc.typelivro digital-
Aparece nas coleções:Repositório Institucional - Unesp

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