Retrospective Insights of the COVID-19 Epidemic in the Major Latin American City, São Paulo, Southeastern Brazil

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Autor(es): dc.contributorUniversidade Estadual Paulista (UNESP)-
Autor(es): dc.contributorUniversidade de São Paulo (USP)-
Autor(es): dc.contributorFIOCRUZ-
Autor(es): dc.contributorUniversidade Federal de Minas Gerais (UFMG)-
Autor(es): dc.contributorButantan Institute-
Autor(es): dc.contributorSao Paulo Municipal Health Department—Coordenadoria de Vigilância em Saúde—Secretaria Municipal de São Paulo-
Autor(es): dc.contributorFaculdade de Medicina de São José do Rio Preto (FAMERP)-
Autor(es): dc.contributorSecretaria Municipal de São Paulo-
Autor(es): dc.creatorAssato, Patricia Akemi-
Autor(es): dc.creatorClemente, Luan Gaspar-
Autor(es): dc.creatorGiovanetti, Marta-
Autor(es): dc.creatorRibeiro, Gabriela-
Autor(es): dc.creatorLima, Alex Ranieri Jeronimo-
Autor(es): dc.creatorPalmieri, Melissa-
Autor(es): dc.creatorde Moraes, Leonardo Nazario-
Autor(es): dc.creatorKashima, Simone-
Autor(es): dc.creatorFukumasu, Heidge-
Autor(es): dc.creatorNogueira, Maurício Lacerda-
Autor(es): dc.creatorAlcantara, Luiz Carlos Junior-
Autor(es): dc.creatorNicolodelli, Aline Lais-
Autor(es): dc.creatorMartins, Antonio Jorge-
Autor(es): dc.creatorPetry, Bruna-
Autor(es): dc.creatorBanho, Cecilia Artico-
Autor(es): dc.creatorDos Santos Barros, Claudia Renata-
Autor(es): dc.creatorMoncau-Gadbem, Cristina Tschorny-
Autor(es): dc.creatorMoretti, Debora Botequio-
Autor(es): dc.creatorDe La Roque, Debora Glenda Lima-
Autor(es): dc.creatorMarqueze, Elaine Cristina-
Autor(es): dc.creatorMattos, Elisangela Chicaroni-
Autor(es): dc.creatorSilva, Fabiana Erica Vilanova Da-
Autor(es): dc.creatorDa Costa, Felipe Allan Da Silva-
Autor(es): dc.creatorCacherik, Giselle-
Autor(es): dc.creatorDe Souza Todao Bernardino, Jardelina-
Autor(es): dc.creatorLesbon, Jessika Cristina Chagas-
Autor(es): dc.creatorSacchetto, Lívia-
Autor(es): dc.creatorDe Lima, Loyze Paola Oliveira-
Autor(es): dc.creatorCaldeira, Luiz Artur Vieira-
Autor(es): dc.creatorMartininghi, Maiara-
Autor(es): dc.creatorMoraes, Marília Mazzi-
Autor(es): dc.creatorPoleti, Mirele Daiana-
Autor(es): dc.creatorCattony Neto, Pedro De Queiroz-
Autor(es): dc.creatorCassano, Raquel De Lello Rocha Campos-
Autor(es): dc.creatorBrassaloti, Ricardo Augusto-
Autor(es): dc.creatorSlavov, Svetoslav Nanev-
Autor(es): dc.creatorViala, Vincent Louis-
Autor(es): dc.creatorCoutinho, Luiz Lehmann-
Autor(es): dc.creatorGrotto, Rejane Maria Tommasini-
Autor(es): dc.creatorNeto, Raul Machado-
Autor(es): dc.creatorCovas, Dimas Tadeu-
Autor(es): dc.creatorSampaio, Sandra Coccuzzo-
Autor(es): dc.creatorElias, Maria Carolina-
Autor(es): dc.creatorSouza-Neto, Jayme A.-
Data de aceite: dc.date.accessioned2025-08-21T20:37:32Z-
Data de disponibilização: dc.date.available2025-08-21T20:37:32Z-
Data de envio: dc.date.issued2023-07-29-
Data de envio: dc.date.issued2023-07-29-
Data de envio: dc.date.issued2023-01-31-
Fonte completa do material: dc.identifierhttp://dx.doi.org/10.3390/v15020327-
Fonte completa do material: dc.identifierhttp://hdl.handle.net/11449/246964-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/11449/246964-
Descrição: dc.descriptionSão Paulo is the financial center of Brazil, with a population of over 12 million, that receives travelers from all over the world for business and tourism. It was the first city in Brazil to report a case of COVID-19 that rapidly spread across the city despite the implementation of the restriction measures. Despite many reports, much is still unknown regarding the genomic diversity and transmission dynamics of this virus in the city of São Paulo. Thus, in this study, we provide a retrospective overview of the COVID-19 epidemic in São Paulo City, Southeastern, Brazil, by generating a total of 9995 near-complete genome sequences from all the city’s different macro-regions (North, West, Central, East, South, and Southeast). Our analysis revealed that multiple independent introduction events of different variants (mainly Gamma, Delta, and Omicron) occurred throughout time. Additionally, our estimates of viral movement within the different macro-regions further suggested that the East and the Southeast regions were the largest contributors to the Gamma and Delta viral exchanges to other regions. Meanwhile, the North region had a higher contribution to the dispersion of the Omicron variant. Together, our results reinforce the importance of increasing SARS-CoV-2 genomic monitoring within the city and the country to track the real-time evolution of the virus and to detect earlier any eventual emergency of new variants of concern that could undermine the fight against COVID-19 in Brazil and worldwide.-
Descrição: dc.descriptionPan American Health Organization-
Descrição: dc.descriptionInternational Centre for Genetic Engineering and Biotechnology-
Descrição: dc.descriptionSchool of Agricultural Sciences São Paulo State University (UNESP)-
Descrição: dc.descriptionCentro de Genômica Funcional da ESALQ University of São Paulo-
Descrição: dc.descriptionInstituto Oswaldo Cruz FIOCRUZ-
Descrição: dc.descriptionInstituto de Ciências Biológicas Universidade Federal de Minas Gerais-
Descrição: dc.descriptionDepartment of Science and Technology for Humans and the Environment, University of Campus Bio-Medico di Roma-
Descrição: dc.descriptionButantan Institute-
Descrição: dc.descriptionHealth Surveillance Coordination Sao Paulo Municipal Health Department—Coordenadoria de Vigilância em Saúde—Secretaria Municipal de São Paulo-
Descrição: dc.descriptionRibeirão Preto Medical School Blood Center of Ribeirão Preto University of São Paulo-
Descrição: dc.descriptionDepartment of Veterinary Medicine School of Animal Science and Food Engineering University of Sao Paulo-
Descrição: dc.descriptionFaculdade de Medicina de São José do Rio Preto (FAMERP)-
Descrição: dc.descriptionPrimary Care Coordination/Sao Paulo Municipal Health Department Coordenadoria de Atenção Básica Secretaria Municipal de São Paulo-
Descrição: dc.descriptionGenomic Surveillance Network São Paulo State University (UNESP)-
Descrição: dc.descriptionSchool of Agricultural Sciences São Paulo State University (UNESP)-
Descrição: dc.descriptionGenomic Surveillance Network São Paulo State University (UNESP)-
Descrição: dc.descriptionPan American Health Organization: APO21-00010098-
Descrição: dc.descriptionInternational Centre for Genetic Engineering and Biotechnology: CRP/BRA20-03-
Idioma: dc.languageen-
Relação: dc.relationViruses-
???dc.source???: dc.sourceScopus-
Palavras-chave: dc.subjectBrazil-
Palavras-chave: dc.subjectCOVID-19-
Palavras-chave: dc.subjectgenomic surveillance-
Palavras-chave: dc.subjectSARS-CoV-2-
Palavras-chave: dc.subjectSão Paulo-
Título: dc.titleRetrospective Insights of the COVID-19 Epidemic in the Major Latin American City, São Paulo, Southeastern Brazil-
Tipo de arquivo: dc.typelivro digital-
Aparece nas coleções:Repositório Institucional - Unesp

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