A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis

Registro completo de metadados
MetadadosDescriçãoIdioma
Autor(es): dc.contributorUniv. de São Paulo-
Autor(es): dc.contributorUniversidade Estadual Paulista (UNESP)-
Autor(es): dc.contributorUniversidade Federal de Pernambuco (UFPE)-
Autor(es): dc.contributorUniv. Estadual de Campinas-
Autor(es): dc.contributorCentre National de Ressources Génomique Végétales-
Autor(es): dc.contributorMendelics Análise Genômica AS-
Autor(es): dc.contributorUniv. of Vienna-
Autor(es): dc.creatorCosta, Zirlane Portugal-
Autor(es): dc.creatorVarani, Alessandro Mello-
Autor(es): dc.creatorCauz-Santos, Luiz Augusto-
Autor(es): dc.creatorSader, Mariela Analía-
Autor(es): dc.creatorGiopatto, Helena Augusto-
Autor(es): dc.creatorZirpoli, Bruna-
Autor(es): dc.creatorCallot, Caroline-
Autor(es): dc.creatorCauet, Stephane-
Autor(es): dc.creatorMarande, Willian-
Autor(es): dc.creatorSouza Cardoso, Jessica Luana-
Autor(es): dc.creatorPinheiro, Daniel Guariz-
Autor(es): dc.creatorKitajima, João Paulo-
Autor(es): dc.creatorDornelas, Marcelo Carnier-
Autor(es): dc.creatorHarand, Andrea Pedrosa-
Autor(es): dc.creatorBerges, Helene-
Autor(es): dc.creatorMonteiro-Vitorello, Claudia Barros-
Autor(es): dc.creatorCarneiro Vieira, Maria Lucia-
Data de aceite: dc.date.accessioned2025-08-21T20:38:13Z-
Data de disponibilização: dc.date.available2025-08-21T20:38:13Z-
Data de envio: dc.date.issued2022-04-29-
Data de envio: dc.date.issued2022-04-29-
Data de envio: dc.date.issued2020-12-31-
Fonte completa do material: dc.identifierhttp://dx.doi.org/10.1002/tpg2.20117-
Fonte completa do material: dc.identifierhttp://hdl.handle.net/11449/229207-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/11449/229207-
Descrição: dc.descriptionThe genus Passiflora comprises a large group of plants popularly known as passionfruit, much appreciated for their exotic flowers and edible fruits. The species (∼500) are morphologically variable (e.g., growth habit, size, and color of flowers) and are adapted to distinct tropical ecosystems. In this study, we generated the genome of the wild diploid species Passiflora organensis Gardner by adopting a hybrid assembly approach. Passiflora organensis has a small genome of 259 Mbp and a heterozygosity rate of 81%, consistent with its reproductive system. Most of the genome sequences could be integrated into its chromosomes with cytogenomic markers (satellite DNA) as references. The repeated sequences accounted for 58.55% of the total DNA analyzed, and the Tekay lineage was the prevalent retrotransposon. In total, 25,327 coding genes were predicted. Passiflora organensis retains 5,609 singletons and 15,671 gene families. We focused on the genes potentially involved in the locus determining self-incompatibility and the MADS-box gene family, allowing us to infer expansions and contractions within specific subfamilies. Finally, we recovered the organellar DNA. Structural rearrangements and two mitoviruses, besides relics of other mobile elements, were found in the chloroplast and mt-DNA molecules, respectively. This study presents the first draft genome assembly of a wild Passiflora species, providing a valuable sequence resource for genomic and evolutionary studies on the genus, and support for breeding cropped passionfruit species.-
Descrição: dc.descriptionDep. de Genética Escola Superior de Agricultura “Luiz de Queiroz” Univ. de São Paulo-
Descrição: dc.descriptionDep. de Tecnologia Faculdade de Ciências Agrárias e Veterinárias Univ. Estadual Paulista-
Descrição: dc.descriptionDep. de Botânica Univ. Federal de Pernambuco-
Descrição: dc.descriptionDep. de Biologia Vegetal Instituto de Biologia Univ. Estadual de Campinas-
Descrição: dc.descriptionInstitut National de la Recherche Agronomique Centre National de Ressources Génomique Végétales-
Descrição: dc.descriptionMendelics Análise Genômica AS-
Descrição: dc.descriptionDep. of Botany and Biodiversity Research Univ. of Vienna-
Descrição: dc.descriptionDep. de Tecnologia Faculdade de Ciências Agrárias e Veterinárias Univ. Estadual Paulista-
Idioma: dc.languageen-
Relação: dc.relationPlant Genome-
???dc.source???: dc.sourceScopus-
Título: dc.titleA genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis-
Tipo de arquivo: dc.typelivro digital-
Aparece nas coleções:Repositório Institucional - Unesp

Não existem arquivos associados a este item.