SNP Markers as a Successful Molecular Tool for Assessing Species Identity and Geographic Origin of Trees in the Economically Important South American Legume Genus Dipteryx

Registro completo de metadados
MetadadosDescriçãoIdioma
Autor(es): dc.contributorInst Invest Amazonia Peruana IIAP-
Autor(es): dc.contributorThunen Inst Forest Genet-
Autor(es): dc.contributorInst Florestal Sao Paulo-
Autor(es): dc.contributorUniversidade Estadual Paulista (Unesp)-
Autor(es): dc.contributorUniv Autonoma Gabriel Rene Moreno-
Autor(es): dc.contributorUniv Guyane-
Autor(es): dc.contributorUniv Bordeaux-
Autor(es): dc.contributorEscola Nacl Bot Trop-
Autor(es): dc.contributorInst Pesquisas Jardim Bot Rio de Janeiro-
Autor(es): dc.contributorUniversidade Federal da Bahia (UFBA)-
Autor(es): dc.creatorHonorio Coronado, Euridice N.-
Autor(es): dc.creatorBlanc-Jolivet, Celine-
Autor(es): dc.creatorMader, Malte-
Autor(es): dc.creatorGarcia-Davila, Carmen R.-
Autor(es): dc.creatorGomero, David Aldana-
Autor(es): dc.creatordel Castillo Torres, Dennis-
Autor(es): dc.creatorFlores Llampazo, Gerardo-
Autor(es): dc.creatorHidalgo Pizango, Gabriel-
Autor(es): dc.creatorSebbenn, Alexandre M.-
Autor(es): dc.creatorMeyer-Sand, Barbara R. [UNESP]-
Autor(es): dc.creatorParedes-Villanueva, Kathelyn-
Autor(es): dc.creatorTysklind, Niklas-
Autor(es): dc.creatorTroispoux, Valerie-
Autor(es): dc.creatorMassot, Marie-
Autor(es): dc.creatorCarvalho, Catarina-
Autor(es): dc.creatorLima, Haroldo C. de-
Autor(es): dc.creatorCardoso, Domingos-
Autor(es): dc.creatorDegen, Bernd-
Data de aceite: dc.date.accessioned2022-02-22T00:56:56Z-
Data de disponibilização: dc.date.available2022-02-22T00:56:56Z-
Data de envio: dc.date.issued2021-06-25-
Data de envio: dc.date.issued2021-06-25-
Data de envio: dc.date.issued2020-06-01-
Fonte completa do material: dc.identifierhttp://dx.doi.org/10.1093/jhered/esaa011-
Fonte completa do material: dc.identifierhttp://hdl.handle.net/11449/209559-
Fonte: dc.identifier.urihttp://educapes.capes.gov.br/handle/11449/209559-
Descrição: dc.descriptionDipteryx timber has been heavily exploited in South America since 2000s due to the increasing international demand for hardwood. Developing tools for the genetic identification of Dipteryx species and their geographical origin can help to promote legal trading of timber. A collection of 800 individual trees, belonging to 6 different Dipteryx species, was genotyped based on 171 molecular markers. After the exclusion of markers out of Hardy Weinberg equilibrium or with no polymorphism or low amplification, 83 nuclear, 29 chloroplast, 13 mitochondrial single nucleotide polymorphisms (SNPs), and 2 chloroplast and 5 mitochondrial INDELS remained. Six genetic groups were identified using Bayesian Structure analyses of the nuclear SNPs, which corresponded to the different Dipteryx species collected in the field. Seventeen highly informative markers were identified as suitable for species identification and obtained self-assignment success rates to species level of 78-96%. An additional set of 15 molecular markers was selected to determine the different genetic clusters found in Dipteryx odorata and Dipteryx ferrea, obtaining self-assignment success rates of 91-100%. The success to assign samples to the correct country of origin using all or only the informative markers improved when using the nearest neighbor approach (69-92%) compared to the Bayesian approach (33-80%). While nuclear and chloroplast SNPs were more suitable for differentiating the different Dipteryx species, mitochondrial SNPs were ideal for determining the genetic clusters of D. odorata and D. ferrea. These 32 selected SNPs will be invaluable genetic tools for the accurate identification of species and country of origin of Dipteryx timber.-
Descrição: dc.descriptionGerman Federal Ministry of Food and Agriculture (BMEL) by the LargeScale-project (Forderkennzeichen)-
Descrição: dc.descriptionPrograma Nacional de Innovacion para la Competitividad y Productividad (Innovate Peru)-
Descrição: dc.descriptionConseil Regional d'Aquitaine-
Descrição: dc.descriptionEuropean Union, FEDER-
Descrição: dc.descriptionInvestissements d'avenir-
Descrição: dc.descriptionInst Invest Amazonia Peruana IIAP, Av Jose A Quinones Km 2-5, Iquitos, Peru-
Descrição: dc.descriptionThunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany-
Descrição: dc.descriptionInst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil-
Descrição: dc.descriptionUniv Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil-
Descrição: dc.descriptionUniv Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Lab Dendrocronol, Carrera Ingn Forestal, Km 9 Carretera Norte, El Vallecito, Santa Cruz, Bolivia-
Descrição: dc.descriptionUniv Guyane, Univ Antilles, CNRS, INRA,UMR0745,EcoFoG,AgroParisTech,Cirad, Campus Agron,Ave France,BP97387, Kourou, France-
Descrição: dc.descriptionUniv Bordeaux, INRAE, BIOGECO, F-33610 Cestas, France-
Descrição: dc.descriptionEscola Nacl Bot Trop, Rua Pacheco Leao 2040, BR-22460030 Rio De Janeiro, RJ, Brazil-
Descrição: dc.descriptionInst Pesquisas Jardim Bot Rio de Janeiro, Rua Pacheco Leao 915, BR-22460030 Rio De Janeiro, RJ, Brazil-
Descrição: dc.descriptionUniv Fed Bahia, Inst Biol, Rua Barao de Jeremoabo S-N, BR-40170115 Salvador, BA, Brazil-
Descrição: dc.descriptionUniv Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil-
Descrição: dc.descriptionGerman Federal Ministry of Food and Agriculture (BMEL) by the LargeScale-project (Forderkennzeichen): 281-001-01-
Descrição: dc.descriptionPrograma Nacional de Innovacion para la Competitividad y Productividad (Innovate Peru): 381-PNICP-PIAP-2014-
Descrição: dc.descriptionConseil Regional d'Aquitaine: 20030304002FA-
Descrição: dc.descriptionConseil Regional d'Aquitaine: 20040305003FA-
Descrição: dc.descriptionEuropean Union, FEDER: 2003227-
Descrição: dc.descriptionInvestissements d'avenir: ANR-10-EQPX-16-01-
Descrição: dc.descriptionInvestissements d'avenir: CEBA: ANR-10-LABX-25-01-
Formato: dc.format346-356-
Idioma: dc.languageen-
Publicador: dc.publisherOxford Univ Press Inc-
Relação: dc.relationJournal Of Heredity-
???dc.source???: dc.sourceWeb of Science-
Palavras-chave: dc.subjectCumaru-
Palavras-chave: dc.subjectgenetic assignment-
Palavras-chave: dc.subjectLeguminosae-
Palavras-chave: dc.subjecttimber verification-
Título: dc.titleSNP Markers as a Successful Molecular Tool for Assessing Species Identity and Geographic Origin of Trees in the Economically Important South American Legume Genus Dipteryx-
Tipo de arquivo: dc.typelivro digital-
Aparece nas coleções:Repositório Institucional - Unesp

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